Vanilla inhabitants: The search for associated bacteria and fungi

For this year’s Orchid Show, we’ve gathered stories about the most famous orchid of them all: the genus Vanilla. (Yes, vanilla is an orchid.) One unusual story comes from Ph.D. student Lynnaun Johnson, whose work in our doctoral program in Plant Biology and Conservation took him to Mexico, the native land of edible vanilla.

 

Last April, I ventured to Mexico as part of an international team investigating how cultivation practices influence the growth and health of the orchid Vanilla planifolia.

Vanilla planifolia produces the seedpods used to make vanilla, the spice used for flavoring desserts and beverages, and for providing wonderful aromas in candles, perfumes, and many other things. This collection trip would take me to vanilla’s native habitat of Mexico. All varieties of vanilla originated in Mexico, including those of Madagascar and Tahiti.

Vanilla cultivation

PHOTO: Vanilla planifolia bloom.
Tahitian vanilla is a hybrid of V. planifolia (shown) and V. odorata. Photo by H. Zell CC-BY-SA-3.0

While in Mexico, I visited three farms in the state of Veracruz and one in the state of Puebla. It was fascinating driving to these vanilla farms with my Mexican collaborators. It took us three days of traveling to complete our field collections. Each of the four farms had very different methods of growing V. planifolia. For instance, one of the farmers said he knew what his plants needed and thought growing his vanilla on concrete blocks was the best method. At another farm, the farmer brought decaying wood from a neighboring forest and used it as mulch for his vanilla plants that grew on living posts known as “tuteurs.” This was different from the other farmers who grew their vanilla on trees in the forest and wooden dead “tuteurs.”

Each of the plantations had different soil texture. At the last organic farm, the soil was compact and hard. At the farms that were in the forest, the soil appeared rich and softer. There is no way to quantify the terrestrial root growth, but I did note that the roots in the organic farms were longer and healthier, with some growing up to 4 or 5 feet when we dug the roots up from the soil.

PHOTO: A view of the Pantapec vanilla farm.
At the Pantapec farm in the state of Puebla, Mexico, vanilla is cultivated in a highly managed environment.
PHOTO: A view of the 1 de Mayo vanilla farm
By contrast, the vanilla grown at 1 de Mayo farm in the state of Veracruz, Mexico, is cultivated in a completely natural environment.

The benefits of fungi

PHOTO: Orchid tissue microscopy at 100x.
Research on rare and endangered orchids usually focuses on finding fungi to help in the germination of orchids. We know that orchids will only germinate in nature using fungi. In addition, fungi living inside of plant leaves can benefit the plants’ health by preventing pathogens from growing. Also, bacteria living within the plants and fungi can be beneficial in the same way as the endophytic fungi. (Photo: V. planifolia tissue microscopy at 100x)

My part of the research project is to collect root samples from V. planifolia from each of these different farms to study the fungi and bacteria inhabiting this orchid. Currently, not much is known about the microbes (fungi and bacteria) that reside in orchid roots. Some fungi and bacteria can cause diseases. For example, with the appearance of a fungal pathogen such as Fusarium oxysporum, Mexican farmers can lose 67 percent of their crops when the Fusarium causes the rotting of the Vanilla’s stem and roots. On the other hand, there are beneficial fungi that inhabit roots, known as mycorrhizal fungi. These beneficial symbiotic fungi acquire mineral nutrients for the Vanilla, and sometimes receive carbon from the orchid in exchange. Although 90 percent of plant species have mycorrhizal fungi, and while we have a good understanding of mycorrhizal fungi of some of these relationships, relatively little is known about the mycorrhizal fungi of orchids, including V. planifolia. The reason for this is that isolating and growing the fungi and bacteria associated with orchid roots can be difficult, and some have never been grown outside of their host.

At each farm, I wanted to sample five individual plants of V. planifolia. Additionally, because of the lifestyle of this orchid, I also wanted to sample the above-ground roots (epiphytic) and the below-ground (terrestrial) roots in the soil. Using either a scissors or a scalpel, I cut small root samples and placed them into Ziploc bags. The vanilla plants are very precious to the farmers, and so a few were initially uncomfortable with our cutting off pieces, but ultimately they were very accommodating.

Epiphytic or terrestrial?

PHOTO: The Vanilla orchid's epiphytic roots.
Typically, vanilla grows as a vine, with two types of roots: epiphytic roots (those that wrap around trees or other structures) and terrestrial (soil) roots. This is referred to as hemiepiphytic, because it starts in the ground and grows upward onto the tree’s bark. Many research papers suggest that epiphytic roots do not harbor many fungi, because these roots can photosynthesize, and do not need mutualistic fungus partners.

Back here at the Chicago Botanic Garden, I am in the process of evaluating the microbial community that lives in the root samples I collected. We are using a new technique called high-throughput sequencing that will enable me to evaluate the entire fungal and bacterial community within the orchid’s roots by using their DNA as a way to fingerprint the individual species of microbes. We are not certain how many species of fungi and bacteria we will find, but we predict that this method will give us a good picture of the fungal and bacterial community in these roots and if these communities differ among the different farming techniques. These data will be used to better understand how epiphytic orchids utilize mycorrhizal fungi and refine the best conditions to grow vanilla and prevent diseases in the plants.

This research trip was a delight, not only because of the samples that I collected, but also because I could learn more about how vanilla is grown and used. The farmers showed us how they cure and prepare the vanilla by fermenting it in the sun and before drying it thoroughly. I also tasted homemade “vanilla moonshine,” generously offered by the farmer’s wife. When visiting Papantla, I learned about the Aztec myth that explained how forbidden love created the sacred vanilla orchid. And of course, I was elated because I usually spend the majority of my research time in the lab. And here I was in the tropics, after spending the previous months facing the bitter Chicago 2014 winter.


©2015 Chicago Botanic Garden and my.chicagobotanic.org

A Scientist with Orchid Fever

With our Orchid Show set to open on mid-February and the first shipment of flowers due to arrive any day, we all have a touch of orchid fever here at the Chicago Botanic Garden.

Naturally, we wondered who among us might have the worst case (or best, depending on how you look at it). So we sent out a simple query: do you grow orchids at home? Here follows the best answer ever, from Jim Ault, Ph.D. (He’s our director of ornamental plant research and manager of the Chicagoland Grows plant introduction program.)

PHOTO: Orchids in kitchen window at Ault house.
A view of the kitchen window at the Ault house.

Yes, I do indeed grow orchids at home. I haven’t counted them recently, but I’d admit to 50-plus plants. 

I simply find orchids to be fascinating for their seemingly infinite variations of flower sizes, shapes, colors, fragrance (very important to me!), and for their diverse ecological adaptations (epiphytes, terrestrials, lithophytes) and the resulting puzzle of how best to cultivate them. I first got interested in orchids in the 1970s, both from seeing some in the greenhouses at the University of Michigan, and also from visiting my grandmother in Miami. She was very active in the Florida fern society of the time, and had a backyard of ferns she grew from spores, with a smaller collection of orchids. She would send me home with plants on every visit, all of which I eventually lost, as I didn’t really have a clue as to how to grow them! But I was hooked, I think safe to say now, for life.

PHOTO: Rhynchostylis gigantea.
Rhynchostylis gigantea

As a graduate student in the 1980s, I had a fairly extensive collection of orchids, and was in fact breeding them and germinating their seed in tissue culture; my first breeding projects ever. This hobby actually led me to my career as a plant breeder (of perennial plants) today. I was a member of the Baton Rouge Orchid Society for five or six years, attended quite a few orchid shows and meetings, gave lectures on orchids, and had the chance to visit some of the venerable orchid businesses like Stewart Orchids in California, Fennell’s Orchid Jungle, and Jones and Scully in Florida at perhaps their peak heydays. But my orchid collection had to be abandoned in the late ’80s when I moved to Pennsylvania. Most were sold to a nursery in North Carolina, and some were donated to Longwood Gardens, where I worked from 1988 to 1995.

My orchid hobby came and went multiple times over the intervening years (decades), mostly from a lack of appropriate space to grow them, time, etc. But starting about three years ago, I began seriously accumulating plants again. There was a bit of a learning curve, as many of the hybrids I knew were no longer available; there has been an explosion of breeding new orchid hybrids, many of which were unknown to me; and also orchid names are changing rapidly due to modern DNA technology being used to revise their nomenclature. Just figuring out where to buy plants was an adventure, as most of the orchid nurseries I knew were long gone.  

PHOTO: Slc. Little Toshie 'Gold Country' (upper) and Sc. Seagull's Beaulu Queen (lower).
Slc. Little Toshie ‘Gold Country’ (upper) and Sc. Seagull’s Beaulu Queen (lower)

Currently I grow mostly Cattleya alliance species and hybrids, with an emphasis on the “mini-catts” or miniature Cattleyas, and also a smattering of the larger Cattleyas. Among my favorites of this group are Cattleya walkeriana selections with their heady mix of cinnamon and citrus fragrance (to my nose) and their hybrids like Cattleya Mini Purple; various species formerly in the genus Laelia such as Laelia pumila, (= Cattleya pumila), Laelia dayana (= Cattleya bicalhoi), Laelia sincorana (= Cattleya sincorana), and other closely related jewels of the orchid world.

I’m excited to have in bloom right now the diminutive Sophronitis coccinea (= Cattleya coccinea) with oversized, 2-inch wide flowers of an intense orange-red on a plant no larger than 3 inches tall. S. coccinea is a challenge to grow at all, let alone grow well, but its hybrids are much easier to cultivate, and strut their stuff with flamboyant flowers in deep red, orange, purple, and violet, often produced two and even three times a year.

I also grow a modest number of other species and their hybrids, mostly Neofinetia falcata, Rhynchostylis gigantea, and related hybrids.

PHOTO: Laelia pumila 'Hawaii'
Laelia pumila ‘Hawaii’

I grow most of my orchids in bark mixes, some in New Zealand sphagnum. I use both plastic and clay pots as well as plastic or wood baskets. I prefer the latter as the plants respond best to the excellent aeration around their roots that the open wood baskets provide. Unfortunately this also poses a challenge, figuring out how to hang baskets close enough to windows to provide the necessary high light needed, as well as providing sufficient humidity in the dry winter months. 

My plants spend the summer outdoors on a nursery bench under a piece of shade cloth, and overwinter indoors under lights in the basement, and in nearly every south-facing window in the house! My family is to be commended for their suffering—and patience—after finding sinks and bathtubs filled with plants freshly watered, or obstructed views out windows crowded with plants. Such is life with an orchid addict.

The Orchid Show opens mid-February—a lovely way to celebrate Valentine’s Day. Order your tickets now!


©2015 Chicago Botanic Garden and my.chicagobotanic.org

A practical gift…with a rare provenance

A friend/colleague recently gifted me with a new Chicago Botanic Garden office mug—so appropriate since she knows I don’t go anywhere without a cup of tea. What she didn’t know was that I’d soon be digging into the Rare Book Collection at the Lenhardt Library because of it.

PHOTO: Delicate orchids decorate a white china tea mug.
My new office mug…tells quite a story.

View all the items in the Orchid Show collection.

On the cup is a lovely graphic design of orchids—a topic that’s very top of mind here because of the Orchid Show, now in its final week at the Garden (click here for tickets). Fueled by a new-found love of the family Orchidaceae (a classic case of orchid fever), I took a closer look at the design. Was that a slipper orchid? Which one? What was the story behind it?

Turns out the design stemmed from one of the Garden’s great treasures: our Rare Book Collection. At the Lenhardt Library, director Leora Siegel related the history and details.

The drawings are by Henry Lambert, from a portfolio of 20 plates published as Les Orchidées et les Plantes de Serre; Études. The plates are chromotypogravures (a nineteenth-century French style of photolithography); Paris bookseller Armand Guérinet compiled and issued them in portfolio form, rather than as a book, between 1900 and 1910.

PHOTO: Illustrated orchids from Les Orchidees par Henry Lambert.
The portfolio’s title translates as Orchids and Plants of the Greenhouse; Studies.

The portfolio entered the Garden’s collection in 2002 as part of the purchase of the Massachusetts Horticultural Society’s rare books. In need of TLC—“bumpy, bruised, and dirty,” according to Siegel—the loose prints were sent for conservation to the prestigious Northeast Document Conservation Center (NEDCC) in 2011. (Read more about the process in this recent blog.)

Looking lively upon their return in 2012, the plates then became contenders for an interesting project: the development of the Garden’s own line of merchandise to complement the Orchid Show. Of ten finalists, Plate 4 from the portfolio won out, as seen here in the Illinois Digital Archives (page 8).

Two orchids share the plate. The daintier, spotted, clustered flower is identified as Saccolabium giganteum (later re-classified Rhynchostylis gigantea), an orchid that’s native to Myanmar (formerly Burma). In 1893, its habitat was described as “where the hot winds blow and where the thermometer in the dry season is about 45 degrees Celsius (112 degrees Fahrenheit) in the shade….” (Veitch, A Manual of Orchidaceous Plants…).  The American Orchid Society has a nice write-up about this species and its varieties here.

The slipper orchid Cypripedium schrodere is listed in the 1906 Hortus Veitchii as Cypripedium (Selenipedium) x Schröderae, with the note, “It is one of the finest of the Selenipedia hybrids, and was named as a compliment to the late Baroness Schröder of the Dell, Egham.” Nomenclature for lady slipper orchids gets complicated; the American Orchid Society goes deep into the history here.

PHOTO: Montage of orchid-related products in the Garden Shop.
A Mother’s Day (May 11) gift idea: an exclusive Orchid Show item, plus the promise of a trip to the Orchid Show in 2015!

Next, a graphic design specialist worked with the orchid illustrations, using a bit of creative license to fit the prints to the shape of the products: the cut of a coaster, the drape of a tote, the curve of a coffee cup. From that work came the Garden’s exclusive collection—it’s only available online and at the Garden Shop!—of items that are practical, meant for everyday use, yet connected to a deeper story.

Good design transcends time. It’s quiet, yet thought-provoking. Now that I know the story behind the orchid design, I look at my friend’s gift differently.

Come to think of it, it’s time for a nice cup of tea…

©2014 Chicago Botanic Garden and my.chicagobotanic.org

Blooms with Boyce: The Orchid Show

We learned about some of the more unusual orchids featured in the Orchid Show (purchase tickets here) when we toured with Boyce Tankersley, director of living plant documentation.

PHOTO: Dendrobium Comet King 'Akatsuki' orchid.
Dendrobium Comet King ‘Akatsuki’

Boyce told us we have 183 taxa of orchids in our plant collections and 53 of those are straight species found in the wild. Of course, none of our orchids are wild-collected because that does damage to the species, so the orchids we acquire are propagated through tissue culture. We display the orchids that do best in our greenhouse growing conditions, and most of those do best in the Tropical Greenhouse.

Some of the orchids Boyce shows us in the video below are Vandas, which are native to the Philippines and other islands in Southeast Asia.

Boyce shared his love of Dendrobiums and revealed a goal to visit an area of the Himalaya Mountains where they cover the oak trees. But watch out: Boyce warns us of leeches in the area! (Don’t worry, we don’t have those in our greenhouses!)

Finally, we examined an interesting ground orchid, Phaius tankervilliae ‘Rabin’s Raven’, which is growing very well in our greenhouse conditions.

Vanda Orchid
Vanda manuvadee
Nun orchid
Phaius tankervilliae ‘Rabin’s Raven’

Click on the video link above or watch on YouTube to get the full tour!


©2014 Chicago Botanic Garden and my.chicagobotanic.org

Making a Splash with Orchids

Anne Nies hopped off the corporate ladder and landed in a wetland. There, she was charmed by the enchanting yet elusive white lady’s-slipper orchid (Cypripedium candidum). Or maybe it was the mountain of data that pulled her in.

PHOTO: Anne crouched in the field on a sunny day, in sun hat and gardening gloves, scribbling notes.
Anne Nies at work in the field.

After years of working in management, Nies enrolled in a master’s degree program with the Northwestern University-Chicago Botanic Garden Graduate Program in Plant Biology and Conservation. She was curious to see how she could apply her mastery of numbers and modeling from an earlier degree in mathematics to conservation challenges.

Now 1½ years later, as she prepares to graduate in June, she is completing a study of the state-threatened orchid that has a spotty record of success in Illinois.

Working with more than ten years of data collected by Plants of Concern volunteers, she has sorted through some perplexing trends with the delicate white plants. The orchids showed varied success levels in separate locations that are all classified as high-quality prairie. If the locations were equally strong, then what was causing certain populations to thrive and others to falter?

It was a question Nies had to answer, because, as she explained, when one of these plants perishes, it is almost impossible to restore or replace.

PHOTO: The orchids in the field; surrounded by taller grasses and plants.
White lady’s-slipper orchid can be camouflaged by surrounding foliage.

“What I’m looking at is how the population has access to nutrients in its habitat and how that drives population behavior,” she said. “What are the nutrients that are available to the population, and how does that affect the plants’ behavior, and in particular, how does that affect flowering?”

After a preliminary review of the data, armed her with questions and theories, Nies traveled into the field in the spring and again in the fall for a first-hand analysis.

The initial challenge was to actually find the plant. When it isn’t flowering, white lady’s-slipper blends in easily with surrounding foliage. So she learned where to look and found herself returning again and again to wet and sandy locations, such as wetlands, within the prairie ecosystem.

“Orchids in general tend to be really specific in their habitat,” she said. “I realized there was probably something really different between the prairie as a whole where the orchids live and the specific spot where they are growing.” 

Nies brought back samples of plant tissue, soil, and even root tissue where fungus lives to the Garden’s Soil Laboratory in the Daniel F. and Ada L. Rice Plant Conservation Science Center for exploration.

She hoped to find that a high level of fungus, which lives in the roots of many orchid species, was leading to the healthier populations. But that wasn’t what she found. 

PHOTO: Microscopic image of beneficial orchid fungi.
Helpful fungi live in the roots of orchids and can be identified through a microscope.

Lab results showed that in locations with nutrient-rich soil, the plants had high levels of the beneficial fungi. They also had low levels of photosynthesis—the internal process that creates food from sunlight for a plant. They were not doing very well.

In locations where the plants had higher levels of photosynthesis, Nies found that they had soil low in nutrients.

“What I’m hoping is that knowing the nutrient levels and the high sand composition can help maybe inform land managers and also with the propagation of this orchid,” she said.

Nies plans to incorporate this information with her pending conclusions into her final thesis for her master’s program, before going on to pursue a doctoral degree in the near future.

Much like math, according to Nies, everything is connected in botany, which is what makes it appealing to study. “One of the reasons I’m so interested in orchids is because they are so deeply connected to their habitat,” she explained.

PHOTO: Anne Nies.
Anne Nies explores the Tropical Greenhouse.

Even though she has transitioned to botany, Nies will surely stay connected to her background in pure math, bringing a new perspective and skills to mounting scientific challenges. “It’s amazing to me how much we still don’t know, and how much is out there that still needs to be learned,” she said.

When she has time to wander, Nies heads to the Garden’s Tropical Greenhouse, where there is always another plant calling her name.

©2014 Chicago Botanic Garden and my.chicagobotanic.org